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Center for Models of Life
Niels Bohr Institute
University of Copenhagen
Blegdamsvej 17
2100 Copenhagen Ø

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Kim Sneppen

Kim Sneppen
Position: Head of Center/ Professor
Phone: +45 353 25352

Rasmus Skytte Eriksen, Sine Lo Svenningsen, Kim Sneppen, Namiko Mitarai
A Growing Microcolony can Survive and Support Persistent Propagation of Virulent Phages
Proc. Nat. Acad. Sci. USA 115:337 (2018)

Jan O. Haerter, Namiko Mitarai, and Kim Sneppen
Theory of invasion extinction dynamics in minimal food webs
Phys. Rev. E 97:022404 (2018)

Silas Boye, Steven Ronhild, Ala Trusina, Kim Sneppen
Theory bridging cell polarities with development of robust complex morphologies
BioRxiv 0: (2018)

Derek Ping, Tong Wang, David T. Fraebel, Sergei Maslov, Kim Sneppen, Seppe Kuehn
Hitchhiking, collapse and contingency in phage infections of migrating bacterial populations
BioRxiv 0: (2018)

Svend Bertel Dahl-Jensen, Siham Yennek, Lydie Flasse, Hjalte List Larsen, Dror Sever, Gopal Karremore, Ivana Novak, Kim Sneppen , Anne Grapin-Botton
Deconstructing the principles of ductal network formation in the pancreas
Plos Biology 16:e2002842 (2018)

Cecilia Lövkvist, Kim Sneppen and Jan O. Haerter
Exploring the Link between Nucleosome Occupancy and DNA Methylation
Frontiers in Genetics 8:232 (2018)

Sergei Maslov and Kim Sneppen
Population cycles and species diversity in dynamic Kill-the-Winner model of microbial ecosystems
Scientific Reports 7:39642 (2017)

Jan O Haerter, Namiko Mitarai, Kim Sneppen
Existence and construction of large stable food webs
BioarXiv (preprint) 0: (2017)

Kim Sneppen
Models of Life: : Epigenetics, Diversity & Cycles
Reports on Progress in Physics 0: (2017)

Mette Eriksen, Kim Sneppen, Steen Pedersen, and Namiko Mitarai
Occlusion of the Ribosome Binding Site Connects the Translational Initiation Frequency, mRNA Stability and Premature Transcription Termination
Front. Microbiol. 8:362 (2017)

Nan Hao, Kim Sneppen, Keith E. Shearwin, and Ian B. Dodd
Efficient chromosomal-scale DNA looping in Escherichia coli using multiple DNA-looping elements
Nucleic Acids Res 1:gkx069 (2017)

Sergei Maslov, Kim Sneppen
Severe population collapses and species extinctions in multi-host epidemic dynamics
0: (2017)

Silas Boye Nissen, Marta Perera, Javier Martin Gonzalez, Sophie M. Morgani, Mogens H. Jensen, Kim Sneppen, Joshua M. Brickman, Ala Trusina
Four simple rules that are sufficient to generate the mammalian blastocyst
Plos Biology 15:e2000737 (2017)

Jan O. Haerter, Namiko Mitarai, and Kim Sneppen
Food Web Assembly Rules for Generalized Lotka-Volterra Equations
Plos Computational Biology 12: e1004727 (2016)

Svend Bertel Dahl-Jensen, Manuel Figueiredo-Larsen, Anne Grapin-Botton and Kim Sneppen
Short-range growth inhibitory signals from the epithelium can drive non-stereotypic branching in the pancreas
Physical Biology 13:016007 (2016)

Giulia Sormani, Jan O. Haerter, Cecilia Lövkvist and Kim Sneppen
Stabilization of epigenetic states of CpG islands by local cooperation
Molecular BioSystems 12:2142 (2016)

Cecilia Lövkvist, Ian B. Dodd, Kim Sneppen, and Jan O. Haerter
DNA methylation in human epigenomes depends on local topology of CpG sites
Nucl. Acids Res. 44:5123 (2016)

Namiko Mitarai, Ivar Gunnarson, Buster Niels Pedersen, Christian Anker Rosiek, and Kim Sneppen
Three is much more than two in coarsening dynamics of cyclic competitions
Phys. Rev. E 93:042408 (2016)

Namiko Mitarai, Stanley Brown and Kim Sneppen
Population dynamics of phage and bacteria in spatially structured habitats using Phage λ and Escherichia coli
Journal of Bacteriology 198:1783 (2016)

Chengzhe Tian, Mohammad Roghanian, Mikkel Girke Jørgensen, Kim Sneppen, Michael Askvad Sørensen, Kenn Gerdes and Namiko Mitarai
Rapid Curtailing of the Stringent Response by Toxin-Antitoxin Encoded mRNases
Journal of Bacteriology 198:1918 (2016)

Victor Olariu, Cecilia Lövkvist and Kim Sneppen
Nanog, Oct4 and Tet1 interplay in establishing pluripotency
Scientific Reports 6:25438 (2016)

Florian Uekermann and Kim Sneppen
A cross-immunization model for the extinction of old influenza strains
Scientific Reports 6:25907 (2016)

Michaela J. Obersriebnig, Emil M. H. Pallesen, Kim Sneppen, Ala Trusina and Geneviève Thon
Nucleation and spreading of a heterochromatic domain in fission yeast
Nature Communications 7:11518 (2016)

Kim Sneppen and Ian B. Dodd
Nucleosome dynamics and maintenance of epigenetic states of CpG islands
Physical Review E 93:062417 (2016)

Sergei Maslov, Kim Sneppen
Well-temperate phage: optimal bet-hedging against local environmental collapses
Scientific Reports 5:10523 (2015)

Kim Sneppen and Ian B. Dodd
Cooperative stabilization of the SIR complex provides robust epigenetic memory in a model of SIR silencing in Saccharomyces cerevisiae
Epigenetics 10:293 (2015)

Namiko Mitarai, Szabolcs Semsey, Kim Sneppen
Dynamic competition between transcription initiation and repression: Role of non-equilibrium steps in cell-to-cell heterogeneity
Phys. Rev. E 92:022710 (2015)

Kim Sneppen, Szabolcs Semsey, Aswin S. Seshasayee, and Sandeep Krishna
Restriction Modification Systems as Engines of Diversity
Frontiers in Microbiology 6:528 (2015)

Sergei Maslov, Kim Sneppen
Diversity waves in collapse-driven population dynamics
Plos Computational Biology 11:e1004440 (2015)

Bartłomiej Dybiec, Namiko Mitarai, and Kim Sneppen
Modeling rises and falls in money addicted social hierarchies
Physica Scripta 89:085002 (2014)

Kim Sneppen and Szabolcs Semsey
Mismatch repair at stop codons is directed independent of GATC methylation on the Escherichia coli chromosome
Scientific Reports 4:7346 (2014)

Kamilla Norregaard, Magnus Andersson, Kim Sneppen, Peter Eigil Nielsen, Stanley Brown, Lene B Oddershede
Effect of supercoiling on the lambda switch
Bacteriophage 4: (2014)

Namiko Mitarai, Els Heinsalu, Kim Sneppen
Speciation, Diversification, and Coexistence of Sessile Species That Compete for Space
Plos One 9:e96665 (2014)

Jan O Haerter, Namiko Mitarai, and Kim Sneppen
Phage and bacteria support mutual diversity in a narrowing staircase of coexistence
The ISME Journal 8:2317 (2014)

Kim Sneppen
Models of Life: Dynamics and Regulation in Biological Systems
Cambridge University Press 0: (2014)

Malte Lehmann, Kim Sneppen
Genetic Regulatory Networks that count to 3
Journal of Theoretical Biology 329:15 (2013)

Anne Katrine Alsing and Kim Sneppen
Differentiation of developing olfactory neurons analysed in terms of coupled epigenetic landscapes
Nucl. Acids Res. 41:4755 (2013)

Jeppe Juul, Kim Sneppen, and Joachim Mathiesen
Labyrinthine clustering in a spatial rock-paper-scissors ecosystem
Phys. Rev. E 87:042702 (2013)

Simone Pigolotti, Ludvig Lizana, Daniel Otzen, Kim Sneppen
Quality control system response to stochastic growth of amyloid fibrils
FEBS letters 587:1405 (2013)

Ilaria Cataudella, Kim Sneppen, Kenn Gerdes, Namiko Mitarai
Conditional Cooperativity of Toxin - Antitoxin Regulation Can Mediate Bistability between Growth and Dormancy
PLoS Comput Biol 9:e1003174 (2013)

Kamilla Norregaard, Magnus Andersson, Kim Sneppen, Peter Eigil Nielsen, Stanley Brown, and Lene B. Oddershede
DNA supercoiling enhances cooperativity and efficiency of an epigenetic switch
Proc. Natl. Acad. Sct. USA 110:17386–1739 (2013)

Haerter, Jan O., Cecilia Lövkvist, Ian B. Dodd, and Kim Sneppen
Collaboration between CpG sites is needed for stable somatic inheritance of DNA methylation states
Nucleic Acids Research 27: (2013)

Sebastian Bernhardsson, Namiko Mitarai, Kim Sneppen
Protein Localization with Flexible DNA or RNA
Plos One 7:e29218 (2012)

Ilaria Cataudella, Ala Trusina, Kim Sneppen, Kenn Gerdes, and Namiko Mitarai
Conditional cooperativity in toxin–antitoxin regulation prevents random toxin activation and promotes fast translational recovery
Nuc. Acids Res. 40:6424 (2012)

Bartlomiej Dybiec, Namiko Mitarai, Kim Sneppen
Information spreading and development of cultural centers
Phys. Rev. E 85:056116 (2012)

Namiko Mitarai, Joachim Mathiesen, Kim Sneppen
Emergence of diversity in a model ecosystem
Phys. Rev. E 86:011929 (2012)

Silja Heilmanna, Kim Sneppena, Sandeep Krishna
Coexistence of phage and bacteria on the boundary of self-organized refuges
Proc. Natl. Acad. Sci. USA 109:12828 (2012)

Jan O. Haerter and Kim Sneppen
Spatial Structure and Lamarckian Adaptation Explain Extreme Genetic Diversity at CRISPR Locus
mBio 3:e00126-12 (2012)

Jeppe Juul, Kim Sneppen, and Joachim Mathiesen
Clonal selection prevents tragedy of the commons when neighbors compete in a rock-paper-scissors game
Phys. Rev. E 85:061924 (2012)

Kim Sneppen and Namiko Mitarai
Multistability with a Metastable Mixed State
Phys. Rev. Lett. 109:100602 (2012)

Florian Uekermann and Kim Sneppen
Spreading of multiple epidemics with cross immunization
Phys. Rev. E 86:036108 (2012)

Kim Sneppen and Ian B. Dodd
A Simple Histone Code Opens Many Paths to Epigenetics
PLoS Comput Biol 8:e1002643 (2012)

Zsolt Csiszovszki, Dale E. A. Lewis, Phuoc Le, Kim Sneppen and Szabolcs Semsey
Specific contacts of the −35 region of the galP1 promoter by RNA polymerase inhibit GalR-mediated DNA looping repression
Nucl. Acids Res 40:10064 (2012)

S. Bornholdt, M. H. Jensen and K. Sneppen
Emergence and Decline of Scientific Paradigms

Margit Pedersen, Søren Nissen, Namiko Mitarai, Sine Lo Svenningsen, Kim Sneppen, and Steen Pedersen
The Functional Half-Life of an mRNA Depends on the Ribosome Spacing in an Early Coding Region
J. Mol. Biol. 407:35 (2011)

L. Lizana, N. Mitarai, H. Nakanishi, and K. Sneppen
Modeling the spatial dynamics of culture spreading in the presence of cultural strongholds
Phys. Rev. E 83:066116 (2011)

Bendtsen KM, Erdossy J, Csiszovszki Z, Svenningsen SL, Sneppen K, Krishna S, Semsey S.
Direct and indirect effects in the regulation of overlapping promoters.
Nucleic Acids Res. 39:6879 (2011)

J.O. Haerter, A. Trusina, K. Sneppen
Bacterial CRISPR defense system buffers phage diversity
Journal of Virology 85:10554 (2011)

Joachim Mathiesen, Namiko Mitarai, Kim Sneppen, and Ala Trusina
Ecosystems with mutually exclusive interactions self-organize to a state of high diversity
Phys. Rev. Lett. 107 107:188101 (2011)

Jeppe Juul and Kim Sneppen
Locally self-organized quasicritical percolation in a multiple-disease model
Phys. Rev. E 84:036119 (2011)

Ian B. Dodd and Kim Sneppen
Barriers and Silencers: A Theoretical Toolkit for Control and Containment of Nucleosome-Based Epigenetic States
Journal of Molecular Biology 0: (2011)

Anne Alsing, Margit Pedersen, Kim Sneppen, Karin Hammer
Key Players in the Genetic Switch of Bacteriophage TP901-1
Biophysical Journal 100:313 (2011)

Kristian Moss Bendtsen, János Erdőssy, Zsolt Csiszovszki, Sine Lo Svenningsen, Kim Sneppen, Sandeep Krishna and Szabolcs Semsey
Direct and indirect effects in the regulation of overlapping promoters
Nucleic Acid Research 39:6879 (2011)

L. Lizana, M. Rosvall and K. Sneppen
Time walkers and spatial dynamics of ageing information
Phys. Rev. Lett. 104:040603 (2010)

Silja Heilmann, Kim Sneppen and Sandeep Krishna
Sustainability of Virulence in a Phage-Bacterial Ecosystem
Journal of Virology 84: (2010)

Mille A. Micheelsen, Namiko Mitarai, Kim Sneppen, Ian. B. Dodd
Theory for stability and regulation of epigenetic landscapes
Phys. Biol. 7:026010 (2010)

Kim Sneppen, Sandeep Krishna, Szabolcs Semsey
Simplified Models of Biological Networks
Annual Review of Biophysics 39:43 (2010)

Christian Garde, Thomas Bjarnsholt, Michael Givskov, Tim Holm Jakobsen, Morten Hentzer, Anetta Claussen, Kim Sneppen, Jesper Ferkinghoff-Borg and Thomas Sams
Quorum Sensing Regulation in Aeromonas hydrophila
J. Mol. Biol. 396:849–857 (2010)

Sneppen K, Pedersen S, Krishna S, Dodd I, Semsey S.
Economy of operon formation: cotranscription minimizes shortfall in protein complexes.
MBio 1: e00177 (2010)

J. Mathiesen, B. Jamtveit, K. Sneppen.
Organizational structure and communication networks in a university environment
Phys. Rev. E 82:016104 (2010)

Sneppen K, Trusina A, Jensen MH, and Bornholdt S
A minimal model for multiple epidemics and immunity spreading.
Plos One 5:e13326 (2010)

Mikkel Avlund, Sandeep Krishna, Szabolcs Semsey, Ian B. Dodd, Kim Sneppen
Minimal Gene Regulatory Circuits for a Lysis-Lysogeny Choice in the Presence of Noise
PLoS ONE 5:e15037 (2010)

Maria Werner, Szabolcs Semsey, Kim Sneppen, Sandeep Krishna
Dynamics of Uptake and Metabolism of Small Molecules in Cellular Response Systems
PLoS ONE 4:e4923 (2009)

Stefan Bornholdt, Kim Sneppen, and Hildegard Westphal
Longevity of orders is related to the longevity of their constituent genera rather than genus richness
Theory in Biosciences: doi: 10.1007/s12064-008-0053-9 0: (2009)

M. Rosvall and K. Sneppen
Reinforced communication and social navigation generate groups in model networks
Phys. Rev. E 79:026111 (2009)

K. Sneppen, L. Lizana, M. H. Jensen , S. Pigolotti and D. Otzen
Modeling proteasome dynamics in Parkinsons disease
Phys. Biol. 6:036005 (2009)

Sergei Maslov, Sandeep Krishna, Tin Yau Pang and Kim Sneppen
Toolbox model of evolution of prokaryotic metabolic networks and their regulation
PNAS 106:9743 (2009)

Namiko Mitarai, Julie-Anna M. Benjamin, Sandeep Krishna, Szabolcs Semsey, Zsolt Csiszovszki, Eric Massé, and Kim Sneppen
Dynamic features of gene expression control by small regulatory RNAs
Proc. Natl. Acad. Sci. USA 106:10655 (2009)

P. Gerlee, L. Lizana and K. Sneppen
Pathway identification by network pruning in the metabolic network of Escherichia coli
Bioinformatics 25:3282 (2009)

Szabolcs Semsey, Julie-Anna M. Benjamin, Namiko Mitarai, Sandeep Krishna, Zsolt Csiszovszki, Kim Sneppen and Eric Massé
Dynamics of the recovery from sRNA-mediated gene silencing
Cell Cycle 8:2863 (2009)

Hiizu Nakanishi, Margit Pedersen, Anne K. Alsing and Kim Sneppen
Modeling of the Genetic Switch of Bacteriophage TP901-1: A Heteromer of CI and MOR Ensures Robust Bistability
J. Mol. Biol. 394:15 (2009)

Mikkel Avlund, Ian B. Dodd, Szabolcs Semsey, Kim Sneppen, and Sandeep Krishna
Why Do Phage Play Dice
Journal of Virology 83:11416 (2009)

Mikkel Avlund, Ian B. Dodd, Kim Sneppen, and Sandeep Krishna
Minimal gene regulatory circuits that can count like bacteriophage lambda
J Mol Biol. 394:681 (2009)

Szabolcs Semsey, Sandeep Krishna, Janos Erdssy, Peter Horvath, Laszlo Orosz, Kim Sneppen and Sankar Adhya
Dominant Negative Autoregulation Limits Steady-State Repression Levels in Gene Networks
Journal of Bacteriology 191:4487 (2009)

Sandeep Krishna, Laszlo Orosz, Kim Sneppen, Sankar Adhya and Szabolcs Semsey
Relation of Intracellular Signal Levels and Promoter Activities in the gal Regulon of Escherichia coli
Journal of Molecular Biology 391:671 (2009)

Jacob Bock Axelsen, Sebastian Bernhardsson, Kim Sneppen
One Hub-One Process: A Tool Based View on Regulatory Network Topology
BMC Systems Biology 2:25 (2008)

Jacob Bock Axelsen, Sandeep Krishna, Kim Sneppen
Cost and Capacity of Signaling in the Escherichia coli Protein Reaction Network
J. Stat. Mech. 0:P01018 (2008)

Kim Sneppen, Mille A Micheelsen & Ian B Dodd
Ultrasensitive gene regulation by positive feedback loops in nucleosome modification
Molecular Systems Biology 4:182 (2008)

Namiko Mitarai, Ian B. Dodd, Michael T. Crooks, Kim Sneppen
The Generation of Promoter-Mediated Transcriptional Noise in Bacteria
PLoS Comput. Biol. 4:e1000109 (2008)

Namiko Mitarai, Kim Sneppen, Steen Pedersen
Ribosome Collisions and Translation Efficiency: Optimization by Codon Usage and mRNA Destabilization
J. Mol. Biol. 382:236 (2008)

Mogens H.Jensen, Kim Sneppen and Luiza Angelutha
Kolmogorov Scaling from Random Force Fields
Europhysics Letters 84:10011 (2008)

Hiizu Nakanishi, Namiko Mitarai, Kim Sneppen
Dynamical Analysis on Gene Activity in the Presence of Repressors and an Interfering Promoter
Biophysical Journal 95:4228 (2008)

Karin Stibius and Kim Sneppen
Modeling the Two-Hybrid Detector: Experimental Bias on Protein Interaction Networks
Biophysics J. 93:1 (2007)

Sandeep Krishna, Sergei Maslov, Kim Sneppen
UV-induced mutagenesis in the Escherichia coli SOS response: A quantitative model
PLoS Comput. Biol. 3:e41 (2007)

Namiko Mitarai, Anna M. C. Andersson, Sandeep Krishna, Szabolcs Semsey, and Kim Sneppen
Efficient degradation and expression prioritization with small RNAs
Phys. biol. 4:164 (2007)

G Tiana, S Krishna, S Pigolotti, M H Jensen and K Sneppen
Oscillations and temporal signalling in cells
Phys. Biol. 4:R1 (2007)

Ian B. Dodd, Mille A. Micheelsen, Kim Sneppen and Geneviève Thon
Theoretical Analysis of Epigenetic Cell Memory by Nucleosome Modification
Cell 129:813-822 (2007)

Szabolcs Semsey, Sandeep Krishna, Kim Sneppen, Sankar Adhya
Signal Integration in the Galactose Network of Escherichia coli
Molecular Microbiology 65:465 (2007)

I.B. Dodd, K.E. Shearwin and K. Sneppen
Modelling transcriptional interference and DNA looping in gene regulation
J. Mol. Biol. 369:1200 (2007)

Jakob Enemark, Kim Sneppen
Analyzing a stochastic model for evolving regulatory networks by unbiased gene duplication
JSTAT 0:P11007 (2007)

Sandeep Krishna, Szabolcs Semsey, Kim Sneppen
Combinatorics of feedback in cellular uptake and metabolism of small molecules
Proc. Natl. Acad. Sci. USA 104:20815 (2007)

Sandeep Krishna, Mogens H. Jensen, Kim Sneppen
Minimal model of spiky oscillations in NF-kB signaling
Proc. Natl. Acad. Sci. (USA) 103:10840 (2006)

Jacob Bock Axelsen, Sebastian Bernhardsson, Martin Rosvall, Kim Sneppen, Ala Trusina
Degree Landscapes in Scale-Free Networks
Phys. Rev. E 74:036119 (2006)

Sandeep Krishna, Anna M. C. Andersson, Szabolcs Semsey, Kim Sneppen
Structure and function of negative feedback loops at the interface of genetic and metabolic networks
Nucleic Acids Research 34:2455 (2006)

Martin Rosvall og Kim Sneppen
Modeling self-organization of communication and topology in social networks
Phys. Rev. E 74:16108 (2006)

Martin Rosvall og Kim Sneppen
Self-Assembling of information in networks
Europhys. Lett. 74:1109 (2006)

Szabolcs Semsey, Anna M. C. Andersson, Sandeep Krishna, Mogens Høgh Jensen, Eric Massé, and Kim Sneppen
Genetic regulation of fluxes: Iron homeostasis of Escherichia coli
Nucleic Acids Research 34:4960 (2006)

Martin Rosvall, Ian B. Dodd, Sandeep Krishna, Kim Sneppen
Network models of phage-bacteria coevolution
Phys. Rev. E 74:66105 (2006)

K. Sneppen, A. Trusina, M. Rosvall
Hide and Seek on Complex Networks
Europhys. Lett. 69:853 (2005)

M. Rosvall, A. Gronlund, P. Minnhagen, K. Sneppen
Searchability of Networks
Phys. Rev. E 72:46117 (2005)

M. Rosvall, P. Minnhagen, K. Sneppen
Navigating Networks with Limited Information
Phys. Rev. E. 71:66111 (2005)

Sneppen K, Dodd IB, Shearwin KE, Palmer AC, Schubert RA, Callen BP, Egan JB
A mathematical model for transcriptional interference by RNA polymerase traffic in Escherichia coli
J. Mol. Biol. 346:399 (2005)

R. Donangelo, A. Hansen, K. Sneppen and S. R. Souza
Need, Greed and Noise: Competing strategies in a trading model
Physica A 348:496 (2005)

Beom Jun Kim, Petter Minhagen, Ala Trusina og Kim Sneppen
Scale Free networks from Aggregation and Creation of Vertices
European Physical Journal B 43:369 (2005)

Sergei Maslov and Kim Sneppen
Computational architecture of the yeast regulatory network.
Phys. Biol. 2:94 (2005)

Ala Trusina, Kim Sneppen, I.B. Dodd, K.E. Shearwin and J.B. Egan.
Functional alignment of regulatory networks: A study of temerate phages
Plos Computational Biology 1:7 (2005)

K.Sneppen and G. Zocchi
Physics in molecular biology, Course Book for master/Phd course in Biological Physics, 300 pages
0:0 (2005)

A. Gronlund, K. Sneppen and P. Minnhagen.
Correlations in Networks associated to Preferential Growth
Physica Scripta 71:680 (2005)

M. Rosvall, A. Trusina, P. Minnhagen, K. Sneppen
Networks and Cities: An Information Perspective
Phys. Rev. Lett 94:28701 (2005)

A. Trusina, M. Rosvall, K. Sneppen
Communication Boundaries in Networks
Phys. Rev. Lett. 94:238701 (2004)

Ala Trusina, Sergei Maslov, Petter Minnhagen, Kim Sneppen
Hierarchy and Anti-Hierarchy in Real and Scale Free networks
Phys. Rev. Lett. 92:178702 (2004)

Jacob Bock Axelsen and Kim Sneppen
Quantifying the benefits of translation regulation in the unfolded protein response
Phys. Biol. 1:159 (2004)

Beom Jun Kim, Ala Trusina, Petter Minnhagen, Kim Sneppen
Self Organized Scale-Free Networks from Mergin and Regeneration
: (2004)

K. Sneppen, M. Rosvall, A. Trusina and P. Minnhagen
A simple model for self organization of bipartite networks
Europhys. Lett. 67:394 (2004)

Kasper Astrup Eriksen, Michael Hörnquist and Kim Sneppen
Visualization of large-scale correlations in gene expressions
Functional & Integrative Genomics 4:241 (2004)

I. Simonsen , K.A. Eriksen , S. Maslov and K. Sneppen
Diffusion on complex networks: a way to probe their
Physica A 336:163 (2004)

P. Minnhagen, M. Rosvall, K. Sneppen and A. Trusina.
Self-organization of structures and networks from merging and small-scale fluctuations
Physica A 340:724 (2004)

D.K. Fygenson, D.J. Needleman and K. Sneppen
Variability alignment identifies functional regions in tubulin paralogs
Protein Science 13:25 (2004)

S. Maslov, K. Sneppen and A. Zaliznyak
Detection of topological patterns in complex networks: correlation profile of the internet
Physica A 333:529 (2004)

Sergei Maslov, Kim Sneppen, Kasper A. Eriksen, Koon-Kiu Yan
Upstream Plasticity and Downstream Robustness in Evolution of Molecular Networks.
BMC Evolutionary Biology 4:9 (2004)

Kasper Astrup Eriksen, Ingve Simonsen, Sergei Maslov, Kim Sneppen
Modularity and Extreme Edges of the Interet
Phys. Rev. Lett. 90:148701 (2003)

Martin Rosvall and Kim Sneppen
Modeling Dynamics of Information Networks
Phys. Rev. Lett. 91:178791 (2003)

K.T. Bæk, S. Svenningsen, H. Eisen, K. Sneppen and S. Brown
Single-cell analysis of lambda immunity regulation
J. Mol. Biol. 334:363 (2003)

M.H. Jensen, G. Tiana and K. Sneppen
Sustained oscillations and time delays in gene expression of protein Hes1
Febs letters 541:176 (2003)

T. Hwa, E. Marinari, K. Sneppen, Lei-han Tang
Localization of Denaturation Bubbles in random DNA Sequences
PNAS 100:4411 (2003)

Sergei Maslov and Kim Sneppen
Specificity and stability in topology of proteins networks
Science 296:910 (2002)

G. Tiana, M.H. Jensen and K. Sneppen
Time delay as a key to apoptosis induction in the p53 network
Eur. Phys. J. B 29:135 (2002)

E. Aurell and K. Sneppen
Epigenetics as a first exit problem
Phys. Rev. Lett 88:48101 (2002)

S. Maslov and K. Sneppen
Protein interaction networks beyond artifacts
FEBS 530:255 (2002)

E. Aurell, S. Brown, J. Johansen, K. Sneppen
Stability puzzles in lambda phage
Phys. Rev. E 65:51914 (2002)

R. Donangelo and K. Sneppen
Cooperativity in a trading model with memory and production
Physica A 316:581 (2002)

K.B. Arnvig, S. Pedersen and K. Sneppen
Thermodynamics of Heat Shock Response
Phys. Rev. Lett. 84:3005 (2000)

S. Bornholdt and K.Sneppen
Robustness as an evolutionary principle
Proc Roy. Soc. London B 267:2281 (2000)

T. Sams, K. Sneppen, M. H. Jensen, C. Ellegaard, B. E. Christensen and U. Trane
Morphological instability in a growing yeast colony
Phys. Rev. Lett. 79:313 (1997)

Per Bak and Kim Sneppen
Punctuated equilibrium and criticality in a simple model of evoluton
Phys. Rev. Lett. 71:4083 (1993)

K. Sneppen
Self-organized pinning and interface growth in a random medium
Phys. Rev. Lett. 69:3539 (1992)

K. Sneppen, J. Krug, M. H. Jensen, C. Jayaprakash, and T. Bohr.
Dynamic scaling and crossover analysis for the Kuramoto - Sivashinsky equation
Phys. Rev. A 46:0 (1992)